Selected Publications

Submitted by Roberta L. Diehl on Monday, 8/17/2015, at 9:52 AM

Computational Biology

A. Mahmoody, C.L. Kahn, B.J. Raphael. Reconstructing Genome Mixtures From Partial Adjacencies. Proceedings of the Tenth Annual RECOMB Satellite Workshop on Comparative Genomics: 2012 Oct 17-19; Niteroi, Brazil; vol. 13, 2012.

Crystal L. Kahn.  "Algorithms for Analyzing Human Genome Rearrangements".  Ph.D. dissertation, Brown University, 2011.  

Crystal Kahn, Shay Mozes, and Benjamin Raphael. Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes. Algorithms for Molecular Biology, 5(1):11, 2010.

Crystal L. Kahn, Borislav H. Hristov, and Benjamin J. Raphael. Parsimony and likelihood reconstruction of human segmental duplications. Bioinformatics, 26(18):i446– i452, 2010.

Crystal L. Kahn, Shay Mozes, and Ben J. Raphael. Efficient algorithms for analyzing segmental duplications, deletions, and inversions in genomes. In WABI, volume 5724 of Lecture Notes in Computer Science, pages 169–180. Springer, 2009.

Crystal L. Kahn and Ben J. Raphael. A parsimony approach to analysis of human segmental duplications. In Pacific Symposium on Biocomputing, volume 14, pages 126–137, 2009.

Crystal L. Kahn and Ben J. Raphael. Analysis of segmental duplications via duplication distance. Bioinformatics, 24:i133–138, 2008.

Parallel Computing

Hahn Kim, Crystal Kahn, and Jeremy Kepner. “pMatlabXVM: Parallel Matlab for Extreme Virtual Memory.” OSC Parallel Matlab Workshop, Supercomputing: 2005 Nov 15; Seattle, WA.

Hahn Kim, Jeremy Kepner, and Crystal Kahn. “Parallel Out-of-Core Matlab for Extreme Virtual Memory,” (Poster), IEEE Conference on Cluster Computing (Clusters 2005), September 26-30, 2005.

Hahn Kim, Jeremy Kepner, Michael Vai, and Crystal Kahn. "Advanced Hardware and Software Technologies for Ultra-long FFT’s." Proceedings of the 9th Annual Workshop on High Performance Embedded Computing (HPEC): 2005 Sept 20-25.

Hahn Kim, Crystal Kahn, and Jeremy Kepner. "Parallel MATLAB for Extreme Virtual Memory." Proceedings of DoD High Performance Computing Modernization Program Users Group Conference: 2005 June 28; Nashville, TN.